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Equipe Equipe "Biologie structurale intégrative / Ribosomes"
Publications
Crystal structure of the GDP-bound GTPase Era from Staphylococcus aureus.
Klochkova E, Biktimirov A, Islamov D, Belousov A, Validov S, Yusupov M, Usachev K
Biochem Biophys Res Commun. 2024 10 18;735:150852
Cryo-EM structure of the inactive ribosome complex accumulated in chick embryo cells in cold-stress conditions.
Nurullina L, Terrosu S, Myasnikov AG, Jenner LB, Yusupov M
FEBS Lett. 2024 02 23;:
Crystal structure of GTPase YsxC from Staphylococcus aureus.
Biktimirov A, Islamov D, Fatkhullin B, Lazarenko V, Validov S, Yusupov M, Usachev K
Biochem Biophys Res Commun. 2024 01 17;699:149545
mRNA reading frame maintenance during eukaryotic ribosome translocation.
Milicevic N, Jenner L, Myasnikov A, Yusupov M, Yusupova G
Nature. 2023 11 29;:
Structural aspects of RimP binding on small ribosomal subunit from Staphylococcus aureus.
Garaeva N, Fatkhullin B, Murzakhanov F, Gafurov M, Golubev A, Bikmullin A, Glazyrin M, Kieffer B, Jenner L, Klochkov V, Aganov A, Rogachev A, Ivankov O, Validov S, Yusupov M, Usachev K
Structure. 2023 11 14;:
Discovery of natural-product-derived sequanamycins as potent oral anti-tuberculosis agents.
Zhang J, Lair C, Roubert C, Amaning K, Barrio MB, Benedetti Y, Cui Z, Xing Z, Li X, Franzblau SG, Baurin N, Bordon-Pallier F, Cantalloube C, Sans S, Silve S, Blanc I, Fraisse L, Rak A, Jenner LB, Yusupova G, Yusupov M, Zhang J, Kaneko T, Yang TJ, Fotouhi N, Nuermberger E, Tyagi S, Betoudji F, Upton A, Sacchettini JC, Lagrange S
Cell. 2023 02 20;:
Yet Another Similarity between Mitochondrial and Bacterial Ribosomal Small Subunit Biogenesis Obtained by Structural Characterization of RbfA from .
Bikmullin AG, Fatkhullin B, Stetsenko A, Gabdulkhakov A, Garaeva N, Nurullina L, Klochkova E, Golubev A, Khusainov I, Trachtmann N, Blokhin D, Guskov A, Validov S, Usachev K, Yusupov M
Int J Mol Sci. 2023 01 20;24(3):
Y98 Mutation Leads to the Loss of RsfS Anti-Association Activity in .
Fatkhullin B, Golubev A, Garaeva N, Validov S, Gabdulkhakov A, Yusupov M
Int J Mol Sci. 2022 09 18;23(18):
Backbone and side chain NMR assignments for the ribosome maturation factor P (RimP) from Staphylococcus aureus.
Garaeva NS, Bikmullin AG, Fatkhullin BF, Validov SZ, Keiffer B, Yusupov MM, Usachev KS
Biomol NMR Assign. 2022 09 7;:
Is RsfS a Hibernation Factor or a Ribosome Biogenesis Factor?
Fatkhullin BF, Gabdulkhakov AG, Yusupov MM
Biochemistry (Mosc). 2022 06;87(6):500-510
Accuracy mechanism of eukaryotic ribosome translocation.
Djumagulov M, Demeshkina N, Jenner L, Rozov A, Yusupov M, Yusupova G
Nature. 2021 Dec 1;:
Inhibition of the Eukaryotic 80S Ribosome as a Potential Anticancer Therapy: A Structural Perspective.
Pellegrino S, Terrosu S, Yusupova G, Yusupov M
Cancers (Basel). 2021 Aug 31;13(17):
A Path to the Atomic-Resolution Structures of Prokaryotic and Eukaryotic Ribosomes.
Yusupova G, Yusupov M
Biochemistry (Mosc). 2021 Aug;86(8):926-941
Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in .
Belinite M, Khusainov I, Soufari H, Marzi S, Romby P, Yusupov M, Hashem Y
Front Mol Biosci. 2021 ;8:738752
Hibernation as a Stage of Ribosome Functioning.
Usachev KS, Yusupov MM, Validov SZ
Biochemistry (Mosc). 2020 Nov;85(11):1434-1442
Cryo-EM structure of the ribosome functional complex of the human pathogen Staphylococcus aureus at 3.2 Å resolution.
Golubev A, Fatkhullin B, Khusainov I, Jenner L, Gabdulkhakov A, Validov S, Yusupova G, Yusupov M, Usachev K
FEBS Lett.. 2020 Aug 27;:
Posttranslational modification of Elongation Factor P from Staphylococcus aureus.
Golubev A, Negroni L, Krasnovid F, Validov S, Yusupova G, Yusupov M, Usachev K
FEBS Open Bio. 2020 May 20;:
In vitro Reconstitution of the S. aureus 30S Ribosomal Subunit and RbfA Factor Complex for Structural Studies.
Bikmullin AG, Nurullina LI, Garaeva NS, Klochkova EA, Blokhin DS, Golubev AA, Validov SZ, Khusainov IS, Usachev KS, Yusupov MM
Biochemistry Mosc.. 2020 May;85(5):545-552
Mechanism of ribosome shutdown by RsfS in Staphylococcus aureus revealed by integrative structural biology approach.
Khusainov I, Fatkhullin B, Pellegrino S, Bikmullin A, Liu WT, Gabdulkhakov A, Shebel AA, Golubev A, Zeyer D, Trachtmann N, Sprenger GA, Validov S, Usachev K, Yusupova G, Yusupov M
Nat Commun. 2020 Apr 3;11(1):1656
NMR and crystallographic structural studies of the Elongation factor P from Staphylococcus aureus.
Golubev A, Fatkhullin B, Gabdulkhakov A, Bikmullin A, Nurullina L, Garaeva N, Islamov D, Klochkova E, Klochkov V, Aganov A, Khusainov I, Validov S, Yusupova G, Yusupov M, Usachev K
Eur. Biophys. J.. 2020 Mar 9;:
Dimerization of long Hibernation Promoting Factor from Staphylococcus aureus: structural analysis and biochemical characterization.
Usachev KS, Fatkhullin BF, Klochkova EA, Miftakhov AK, Golubev AA, Bikmullin AG, Nurullina LI, Garaeva NS, Islamov DR, Gabdulkhakov AG, Lekontseva NV, Tishchenko SV, Balobanov VA, Sh Khusainov I, Yusupov MM, Validov SZ
J. Struct. Biol.. 2019 Oct 25;:107408
Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Rozov A, Khusainov I, El Omari K, Duman R, Mykhaylyk V, Yusupov M, Westhof E, Wagner A, Yusupova G
Nat Commun. 2019 Jun 7;10(1):2519
Solution structure of the N-terminal domain of the Staphylococcus aureus hibernation promoting factor.
Usachev KS, Validov SZ, Khusainov IS, Varfolomeev AA, Klochkov VV, Aganov AV, Yusupov MM
J. Biomol. NMR. 2019 May;73(5):223-227
The multiple flavors of GoU pairs in RNA.
Westhof E, Yusupov M, Yusupova G
J. Mol. Recognit.. 2019 Apr 29;:e2782
Backbone and side chain NMR assignments for the ribosome binding factor A (RbfA) from Staphylococcus aureus.
Blokhin DS, Bikmullin AG, Nurullina LI, Garaeva NS, Validov SZ, Klochkov VV, Aganov AV, Khusainov IS, Yusupov MM, Usachev KS
Biomol NMR Assign. 2019 04;13(1):27-30
Understanding the role of intermolecular interactions between lissoclimides and the eukaryotic ribosome.
Pellegrino S, Meyer M, Könst ZA, Holm M, Voora VK, Kashinskaya D, Zanette C, Mobley DL, Yusupova G, Vanderwal CD, Blanchard SC, Yusupov M
Nucleic Acids Res.. 2019 Feb 13;:
Cryo-EM structure of the hibernating Thermus thermophilus 100S ribosome reveals a protein-mediated dimerization mechanism.
Flygaard RK, Boegholm N, Yusupov M, Jenner LB
Nat Commun. 2018 Oct 9;9(1):4179
Backbone and side chain NMR assignments for the ribosome Elongation Factor P (EF-P) from Staphylococcus aureus.
Usachev KS, Golubev AA, Validov SZ, Klochkov VV, Aganov AV, Khusainov IS, Yusupov MM
Biomol NMR Assign. 2018 10;12(2):351-355
Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria.
Rozov A, Wolff P, Grosjean H, Yusupov M, Yusupova G, Westhof E
Nucleic Acids Res.. 2018 Aug 21;46(14):7425-7435
Structural Insights into the Role of Diphthamide on Elongation Factor 2 in mRNA Reading-Frame Maintenance.
Pellegrino S, Demeshkina N, Mancera-Martinez E, Melnikov S, Simonetti A, Myasnikov A, Yusupov M, Yusupova G, Hashem Y
J. Mol. Biol.. 2018 Aug 17;430(17):2677-2687
NMR assignments of the N-terminal domain of Staphylococcus aureus hibernation promoting factor (SaHPF).
Usachev KS, Ayupov RK, Validov SZ, Khusainov IS, Yusupov MM
Biomol NMR Assign. 2018 04;12(1):85-89
The Amaryllidaceae Alkaloid Haemanthamine Binds the Eukaryotic Ribosome to Repress Cancer Cell Growth.
Pellegrino S, Meyer M, Zorbas C, Bouchta SA, Saraf K, Pelly SC, Yusupova G, Evidente A, Mathieu V, Kornienko A, Lafontaine DLJ, Yusupov M
Structure. 2018 Mar 6;26(3):416-425.e4
Aminoglycoside interactions and impacts on the eukaryotic ribosome.
Prokhorova I, Altman RB, Djumagulov M, Shrestha JP, Urzhumtsev A, Ferguson A, Chang CT, Yusupov M, Blanchard SC, Yusupova G
Proc. Natl. Acad. Sci. U.S.A.. 2017 12 19;114(51):E10899-E10908
Evidence for rRNA 2'-O-methylation plasticity: Control of intrinsic translational capabilities of human ribosomes.
Erales J, Marchand V, Panthu B, Gillot S, Belin S, Ghayad SE, Garcia M, Laforêts F, Marcel V, Baudin-Baillieu A, Bertin P, Couté Y, Adrait A, Meyer M, Therizols G, Yusupov M, Namy O, Ohlmann T, Motorin Y, Catez F, Diaz JJ
Proc. Natl. Acad. Sci. U.S.A.. 2017 Dec 5;114(49):12934-12939
Synthesis facilitates an understanding of the structural basis for translation inhibition by the lissoclimides.
Könst ZA, Szklarski AR, Pellegrino S, Michalak SE, Meyer M, Zanette C, Cencic R, Nam S, Voora VK, Horne DA, Pelletier J, Mobley DL, Yusupova G, Yusupov M, Vanderwal CD
Nat Chem. 2017 Nov;9(11):1140-1149
Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF.
Khusainov I, Vicens Q, Ayupov R, Usachev K, Myasnikov A, Simonetti A, Validov S, Kieffer B, Yusupova G, Yusupov M, Hashem Y
EMBO J.. 2017 Jun;:
Inhibition of Eukaryotic Translation by the Antitumor Natural Product Agelastatin A.
McClary B, Zinshteyn B, Meyer M, Jouanneau M, Pellegrino S, Yusupova G, Schuller A, Reyes JCP, Lu J, Guo Z, Ayinde S, Luo C, Dang Y, Romo D, Yusupov M, Green R, Liu JO
Cell Chem Biol. 2017 May 18;24(5):605-613.e5
Crystal structure of eukaryotic ribosome and its complexes with inhibitors.
Yusupova G, Yusupov M
Philos. Trans. R. Soc. Lond., B, Biol. Sci.. 2017 Mar 19;372(1716):
Structure of the 70S ribosome from human pathogen Staphylococcus aureus.
Khusainov I, Vicens Q, Bochler A, Grosse F, Myasnikov A, Ménétret JF, Chicher J, Marzi S, Romby P, Yusupova G, Yusupov M, Hashem Y
Nucleic Acids Res.. 2017 01 25;45(2):1026
Molecular insights into protein synthesis with proline residues.
Melnikov S, Mailliot J, Rigger L, Neuner S, Shin BS, Yusupova G, Dever TE, Micura R, Yusupov M
EMBO Rep.. 2016 12;17(12):1776-1784
Structure of the 70S ribosome from human pathogen Staphylococcus aureus.
Khusainov I, Vicens Q, Bochler A, Grosse F, Myasnikov A, Ménétret JF, Chicher J, Marzi S, Romby P, Yusupova G, Yusupov M, Hashem Y
Nucleic Acids Res.. 2016 12 1;44(21):10491-10504
Crystal Structure of Hypusine-Containing Translation Factor eIF5A Bound to a Rotated Eukaryotic Ribosome.
Melnikov S, Mailliot J, Shin BS, Rigger L, Yusupova G, Micura R, Dever TE, Yusupov M
J. Mol. Biol.. 2016 09 11;428(18):3570-3576
New Structural Insights into Translational Miscoding.
Rozov A, Demeshkina N, Westhof E, Yusupov M, Yusupova G
Trends Biochem. Sci.. 2016 09;41(9):798-814
The ribosome prohibits the G•U wobble geometry at the first position of the codon-anticodon helix.
Rozov A, Westhof E, Yusupov M, Yusupova G
Nucleic Acids Res.. 2016 07 27;44(13):6434-41
Amicoumacin A induces cancer cell death by targeting the eukaryotic ribosome.
Prokhorova IV, Akulich KA, Makeeva DS, Osterman IA, Skvortsov DA, Sergiev PV, Dontsova OA, Yusupova G, Yusupov MM, Dmitriev SE
Sci Rep. 2016 06 14;6:27720
Crystal Structures of the uL3 Mutant Ribosome: Illustration of the Importance of Ribosomal Proteins for Translation Efficiency.
Mailliot J, Garreau de Loubresse N, Yusupova G, Meskauskas A, Dinman JD, Yusupov M
J. Mol. Biol.. 2016 May 22;428(10 Pt B):2195-202
Ribosomes Structure and Mechanisms in Regulation of Protein Synthesis Part I.
Wilson D, Spahn C, Yusupov M
J. Mol. Biol.. 2016 05 22;428(10 Pt B):2133
Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code.
Rozov A, Demeshkina N, Khusainov I, Westhof E, Yusupov M, Yusupova G
Nat Commun. 2016 Jan 21;7:10457
Reconstitution of Functionally Active Thermus thermophilus 30S Ribosomal Subunit from Ribosomal 16S RNA and Ribosomal Proteins.
Agalarov S, Yusupov M, Yusupova G
Methods Mol. Biol.. 2016 ;1320:303-14
Insights into the origin of the nuclear localization signals in conserved ribosomal proteins.
Melnikov S, Ben-Shem A, Yusupova G, Yusupov M
Nat Commun. 2015 Jun 11;6:7382
Structural insights into the translational infidelity mechanism.
Rozov A, Demeshkina N, Westhof E, Yusupov M, Yusupova G
Nat Commun. 2015 Jun 3;6:7251
Ribosome biochemistry in crystal structure determination.
Yusupova G, Yusupov M
RNA. 2015 Apr;21(4):771-3
A structural view of translation initiation in bacteria.
Simonetti A, Marzi S, Jenner L, Myasnikov A, Romby P, Yusupova G, Klaholz BP, Yusupov M
Cell. Mol. Life Sci.. 2009 Feb;66(3):423-36
Structure of the 30S translation initiation complex.
Simonetti A, Marzi S, Myasnikov AG, Fabbretti A, Yusupov M, Gualerzi CO, Klaholz BP
Nature. 2008 Sep 18;455(7211):416-20
Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome.
Myasnikov AG, Marzi S, Simonetti A, Giuliodori AM, Gualerzi CO, Yusupova G, Yusupov M, Klaholz BP
Nat. Struct. Mol. Biol.. 2005 Dec;12(12):1145-9