panISa: ab initio detection of insertion sequences in bacterial genomes from short read sequence data.
Fiche publication
Date publication
novembre 2018
Journal
Bioinformatics (Oxford, England)
Auteurs
Membres identifiés du Cancéropôle Est :
Pr HOCQUET Didier
Tous les auteurs :
Treepong P, Guyeux C, Meunier A, Couchoud C, Hocquet D, Valot B
Lien Pubmed
Résumé
The advent of next-generation sequencing has boosted the analysis of bacterial genome evolution. Insertion sequence (IS) elements play a key role in prokaryotic genome organization and evolution, but their repetitions in genomes complicate their detection from short-read data.
Mots clés
DNA Transposable Elements, Genome, Bacterial, High-Throughput Nucleotide Sequencing, Sequence Analysis, DNA, Software
Référence
Bioinformatics. 2018 11 15;34(22):3795-3800